Current

Amy Lee's Headshot

Amy Lee
Assistant Professor and PI

Dr. Amy Lee received her Ph.D. in Cell and Systems Biology from University of Toronto, and was a postdoctoral fellow at University of British Columbia. Her research focuses on understanding the dynamic interactions between host and pathogens, using both experimental and bioinformatic approaches. Her work ranges from understanding the molecular virulence and antimicrobial resistance mechanisms in pathogens, to looking at host immune responses during development or infection such as sepsis or COVID-19. In her spare time, she likes to work on food fermentation experiments such as culturing sourdough and making kimchi.

Michael Trimble's Headshot

Michael Trimble
Lab Manager

Mike completed his PhD in Microbiology at Indiana University, where he investigated cell division in the bacterium Caulobacter crescentus. He then worked as a postdoctoral fellow at the University of Iowa and the University of British Columbia, studying bacterial motility, cellular signaling, biofilms, and antimicrobials. His work led to an interest in infectious diseases, microbiomes, and genomics. When he’s not in the lab, he enjoys spending time with his family and taking his dog for walks up and down Burnaby Mountain.

Erica Acton's Headshot

Erica Acton
Bioinformatician

Erica is a bioinformatician who eats ‘omics data for breakfast. She is currently using machine learning techniques to find molecular signatures for neonatal sepsis, as well as for disease severity in Covid patients. In her spare time she likes to hike preposterous distances, preferably on difficult terrain.

Travis Blimkie's Headshot

Travis Blimkie
Bioinformatician

Travis is an experienced bioinformatician, who has worked on a large variety of omics projects, commonly engaging with RNA-Seq data to derive biological insights . His research areas include characterizing immune development in neonates, vaccine response in older adults, and bacterial motility and biofilm analyses. He enjoys creating R/Shiny apps and R packages to make data and tools available for use by the broader scientific community. In his spare time, he enjoys hiking and camping in the outdoors, playing guitar, and reading.

Breanna Raymond's Headshot

Breanna Raymond
Postdoctoral Fellow

Breanna is a postdoctoral fellow in the Lee Lab tracking the immune system development in newborns and how sepsis, vaccination, or climate factors cause deviations from a normal trajectory. On weekends she is happily hiking, playing volleyball, or spending time outdoors with friends and family.

Olga Pacios Santamaría (she/her)'s Headshot

Olga Pacios Santamaría (she/her)
Postdoctoral Fellow

Olga is a postdoctoral fellow in the Cullis/Russell Lab and the Lee Lab, contributing to the development of mRNA-LNP bacterial vaccines. Her main focuses are sequencing clinical isolates and establishing challenge models for immunization studies. She loves traveling, hiking in the lakes and mountains of BC, and camping (when the weather cooperates with her Spanish blood!)

Negin Ketabchi (she/her)'s Headshot

Negin Ketabchi (she/her)
Graduate Student

Negin is a graduate student in the Lee Lab exploring host immune responses by applying bioinformatic analyses to understand complex human diseases focusing on the critical area of neonatal sepsis. Her project specifically aims to unravel the impact of prematurity and sepsis on neonatal immune developmental trajectories using whole-blood transcriptomics. In her spare time, she enjoys weight lifting at the gym, drinking ice coffee and watching true crime tv shows.

Jonathan Ho's Headshot

Jonathan Ho
Graduate Student

Jonathan is a graduate student in the Lee Lab studying plasmids within Klebsiella pneumoniae. He aims to understand the distribution and dynamics of plasmids by using phylogenetics, comparative genomics, microbial GWAS. In his spare time, he enjoys playing volleyball, practicing piano, and breaking learning his Linux desktop.

Miguel D. Prieto's Headshot

Miguel D. Prieto
Graduate Student (Ph.D.) co-supervised with Dr. William Hsaio

Miguel studies the impact of the microbiome in human disease. He is a Medical Doctor from the Universidad del Valle (Colombia) and has a MSc in Experimental Medicine (UBC). He has experience working in clinical research of neglected tropical diseases and biomarker discovery for Cystic Fibrosis. In his spare time, he likes to ride his bicycle (weather permitting), read fiction literature, and listen to punk rock music.

Alex Redey's Headshot

Alex Redey
Undergraduate Research Student

Alex is an undergraduate student in the Lee lab. Her current project involves evaluating DNA uptake capacity of Klebsiella pneumoniae. In her spare time, she enjoys soccer, swimming, running, and reading.

Mila Tkatchouk's Headshot

Mila Tkatchouk
Undergraduate Research Student

Mila is an undergraduate student majoring in Molecular Biology and Biochemistry at SFU, doing a directed research semester in the Lee and Brinkman labs. She is currently examining the role of specific genes in the virulence of Pseudomonas aeruginosa, with the use of AlphaFold analyses of protein structure, cloning techniques, and virulence assays with a C. Elegans model of infection. In her spare time she enjoys playing video games, baking, and karaoke.

Lab Alumni

Patrick K. Taylor (he/him), Senior Genome Scientist in the Applied Genomics Centre at Kwantlen Polytechnic University

Joud Albeitshawish, Research Technician

Christine Yang (she/her), DevOps at Amazon

Catherine H. Shin (she/her), Graduate Student at the University of California San Francisco

Kevin Luong Ning (he/him), Graduate Student

Camila Maurmann, Visiting PhD Student from Brazil

Karen Kang (she/her), Master of Public Health Student at the University of Toronto

Mahta Amanian (she/her), Student at UBC Medical School

Elizabeth Fung, Student at UBC Medical School

Sarah Ribeiro-Sahib, Undergraduate Student

Zukhro Pulatova, Undergraduate Student

Ella Chernis, Undergraduate Student

Arjun Mann, Undergraduate Student

Xiao Wu, Undergraduate Research Student co-supervised with Dr. Claudia DosSantos

Pearl Park, Undergraduate Co-op Student co-supervised with Dr. Pascal Lavoie

Chloe Chan, Undergraduate Research Student

Lauren Kazak, Undergraduate Research Student